PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760862.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 332aa    MW: 36293.7 Da    PI: 7.4189
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.9e-18239272134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_009760862.1 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-722328IPR016679Transcription factor, GATA, plant
SMARTSM004016.4E-18233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.517233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.9E-15237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.09E-15237296No hitNo description
CDDcd002021.34E-13238285No hitNo description
PfamPF003202.3E-15239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGSNMVDEID CGSFFDQIDD LIEFPSENEC GGFSSTDCKE FPSIWDQPSD PLFSGSYNNS  60
PSDLSAELSV PYEDIVQLEW LSTFVEDSFS AGGLTLGKEN APINKETSHS KFQSSSPVSV  120
LESSGSSSSS SCSGGKTIPL SPCHRGPQRA RSKRPRPATF NPRPAIQLIS PTSVFIENPR  180
PFVAPVTSSE SGNFAQSPMK KIPRPAAAEQ KTKKKIKFTI PLAPIETNQN STAHAVRRCM  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSMH SNSHKKVLEM  300
RTKDIPENNA TARTQIPATI TEHEFSKSSV EE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760862.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_009760863.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497965.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497966.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4CA080.0A0A1S4CA08_TOBAC; GATA transcription factor
TrEMBLA0A1U7UXU60.0A0A1U7UXU6_NICSY; GATA transcription factor
STRINGXP_009760862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein