PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760820.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 645aa    MW: 70665.8 Da    PI: 4.8064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.6e-51271551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeelv++yL+ k++g + ++  vi+evdi+k+eP+dLp  + v++++++w+fF++ d+ky++g+r nrat++gyWkatgkd++++
  XP_009760820.1  27 LPVGYRFRPTDEELVNHYLRLKINGCHDKV-AVIREVDICKFEPSDLPdlSVVESKDNDWFFFCPIDRKYQNGQRLNRATEQGYWKATGKDRNIV 120
                     799************************999.89**************96448888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  XP_009760820.1 121 TKKGAKIGMKKTLVYYIGRAPEGKRTNWVIHEYRA 155
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5624178IPR003441NAC domain
PROSITE profilePS5100553.08527178IPR003441NAC domain
PfamPF023653.0E-2628154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAVIAGDNSI AGLPVGKHLG VPPLNTLPVG YRFRPTDEEL VNHYLRLKIN GCHDKVAVIR  60
EVDICKFEPS DLPDLSVVES KDNDWFFFCP IDRKYQNGQR LNRATEQGYW KATGKDRNIV  120
TKKGAKIGMK KTLVYYIGRA PEGKRTNWVI HEYRATDKSL DGSHTGQGAF VLCRLFKKNE  180
LKQDENVESS HLDEVQQLVS SPAVGKSPDD EISDAVAPSP IMESDSDKRN PPKISGGETH  240
GTRLPIESRG DSCTVDDTED QMLDITSVPS DPELEKLLEI FCDTSPQHLD WKICSPLHAQ  300
LQVEFGSSYL HAPVINEMSH DQKDVQFQNG TNAFDINEFF NSVLDSSDEL SYEDSGLELR  360
TVQFASNSIN TITRSPVKDF GLCSESKAQV MQEPVGTDFF EPEVLRGNSA QTALTREVNS  420
VATTVEVAFA TPNVSNDHSM GNLDFLNNDY PGDAALSAGS GGMQVPFLLN VEDSSTYSTV  480
GSDSGFGTGI KLRTRLKQNQ PDDKQFGSGT QGTSHRRIRF QMKLQAGSVQ CRTPIDSDKG  540
GANYKGLLTV SESDKFSIED SSTAGAAISS DKTQDTMCKE FKGYGRVAED LSANAKDTDD  600
FPVDEASKTA ALSSFSSSFY ISKALVAVSV IIVFLGILGI CFKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-44161831170NO APICAL MERISTEM PROTEIN
1ut4_B4e-44161831170NO APICAL MERISTEM PROTEIN
1ut7_A4e-44161831170NO APICAL MERISTEM PROTEIN
1ut7_B4e-44161831170NO APICAL MERISTEM PROTEIN
4dul_A4e-44161831170NAC domain-containing protein 19
4dul_B4e-44161831170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760820.10.0PREDICTED: uncharacterized protein LOC104213101 isoform X1
TrEMBLA0A1U7VG460.0A0A1U7VG46_NICSY; uncharacterized protein LOC104213101 isoform X1
STRINGXP_009760820.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.13e-81NAC domain containing protein 62