PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760739.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 252aa    MW: 27848.5 Da    PI: 7.5014
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA382.2e-12129735
            GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    t+TplWR gp  ++ LCnaCG ++r kg+
  XP_009760739.1  1 TDTPLWRPGPPEKPVLCNACGSRWRIKGS 29
                    78********88888**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0012143IPR000679Zinc finger, GATA-type
PfamPF003204.2E-10129IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-8129IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.14E-10141No hitNo description
SuperFamilySSF577162.52E-6130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
TDTPLWRPGP PEKPVLCNAC GSRWRIKGSL DDYIPKHANK ETQSFLLAKL PSDVKPLVLA  60
HDNQRLEVGQ KVAGTDGSSA CSEEKIDDIS SSGSPGSFSE NCMQMQGTNG KIIQLYFHTS  120
GKIVSYMSMA LDFIVIVHLL SGEAAKGPLW NPNSVPRRKR SKLKQYILSP VERLHRQLYH  180
MLQEPEFANT SANEEEILIY QKSKSIPPDE IGNGAMLLIS PSTAREDSKP QFTTAENNGS  240
CSSNFRNENS SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRKRSKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760739.10.0PREDICTED: GATA transcription factor 26-like, partial
TrEMBLA0A1U7VEI60.0A0A1U7VEI6_NICSY; GATA transcription factor 26-like
STRINGXP_009760739.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-23GATA transcription factor 26