PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760719.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 328aa    MW: 38074.6 Da    PI: 8.5524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50351682128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv++yL++kve+k++++ + ikevdiyk++PwdLp +++  + kewyfFs r++ky+++ r+nr+t sg+Wkatg dk+v+s+
  XP_009760719.1  35 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DLIKEVDIYKHDPWDLPrNTAGDNCKEWYFFSMRERKYRNSVRPNRVTGSGFWKATGIDKPVYST 128
                     59***************************.99***************445555667**************************************8 PP

             NAM  96 ....kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                         +        +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_009760719.1 129 tttsQ--StdrgcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 168
                     66541..156666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.16734200IPR003441NAC domain
SuperFamilySSF1019413.66E-5334199IPR003441NAC domain
PfamPF023657.5E-2636168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSEKRAEKIE NMELVENIAT ATNIKAEDEE EIMQLPGFRF HPTDEELVSF YLRRKVENKR  60
IKMDLIKEVD IYKHDPWDLP RNTAGDNCKE WYFFSMRERK YRNSVRPNRV TGSGFWKATG  120
IDKPVYSTTT TSQSTDRGCI GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP NWKTSNQQLP  180
NPKNSIPEAE VWTLCRIFKR TSNYKRFTPD WKQPIIEQSF GDASSKACSL QSETSDNHSI  240
NINFKKMEFP HKNNNTAIGG NYQVDQRTTD YNNSQPIITM PQSSITSSNS SFWNTSAEEQ  300
YLFSDGNWDE LKSVVDLAID PRSLFGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48212061171NO APICAL MERISTEM PROTEIN
1ut4_B2e-48212061171NO APICAL MERISTEM PROTEIN
1ut7_A2e-48212061171NO APICAL MERISTEM PROTEIN
1ut7_B2e-48212061171NO APICAL MERISTEM PROTEIN
4dul_A2e-48212061171NAC domain-containing protein 19
4dul_B2e-48212061171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-47HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760719.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK557e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U7VEG40.0A0A1U7VEG4_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X2
STRINGXP_009760718.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]