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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 43326.1 Da PI: 8.857 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.6 | 1.2e-39 | 131 | 251 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++ +++ e ++s ++++++ +++++ XP_009760495.1 131 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELSRN--IPQ-EI----NNSIGDQNNI---MSESHI 215 79**************************************************************..444.11....1111221122...222222 PP TCP 97 skksqksaasalnlak.esrakarararertrekmriknkl 136 + + +++l k e ++k ra+are+t+ km+ik ++ XP_009760495.1 216 ---L--ECEDHRKLRKmELKEKPRAKARENTKGKMMIKGHK 251 ...2..222235566667788889999999*****999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.5E-39 | 131 | 262 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.361 | 133 | 191 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MFPKSNINDP FSYSSQELLK HSYTHDAYHQ NPSSTSIIVE DHPFFLNNFP SPFLDEHESP 60 LSQIFSHQQQ QQQQELEASD HYHDTEGDPN TSRFGRANVK IIEDQSSNPS AEHVSPSSKK 120 RKLSAKPRRR TGKKDRHSKI CTAQGVRDRR MRLSLQIARK FFDLQDMLGF DKASKTIEWL 180 FSKSKNAIKE LSRNIPQEIN NSIGDQNNIM SESHILECED HRKLRKMELK EKPRAKAREN 240 TKGKMMIKGH KKGKEMYEAN PKNVNKLGSN SQSLENKFAN VGIMESYLGG TSSSISSIFD 300 YQNSGVRGGN IDYFDNCYMG FLENWDNKNS NISCSTTTTN EVQIPFAGNN NTSSIYLDNS 360 RYQFQFLDQE NHFSCRH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 129 | KRKLSAKPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-95 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760495.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Refseq | XP_016465187.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
TrEMBL | A0A1S3ZLF7 | 0.0 | A0A1S3ZLF7_TOBAC; transcription factor TCP24-like | ||||
TrEMBL | A0A1U7VF75 | 0.0 | A0A1U7VF75_NICSY; transcription factor TCP24-like | ||||
STRING | XP_009760495.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-32 | TCP domain protein 12 |