PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760399.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 440aa    MW: 49085.7 Da    PI: 5.8404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08271318455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009760399.1 271 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 318
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-9265322No hitNo description
SuperFamilySSF474591.24E-16265336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5271318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDEKNMFLNN VNTMNELNSF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN SSGNNFVLRE  60
LIGKLGNICN SGEISPNSYV NSTNNSCYTT PLNSPPRLNL SNFDHQINGN LQLLGVNHMS  120
NSTNLAHFSV DSEFNRNVPN LESGKLSRVS SSKCINVSGS QLGVQEFKES EFGESMENSS  180
VSEQIPLGND ANSKKRKSVP KKKAKETNAK NVNVSTEILE SSAKRSKSDE KNGSDTDVAE  240
AKEQNKDNQK TTEPPKDYIH VRARRGQATD AHSLAERVRR EKIGERMKFL QDLVPGCNKV  300
TGKAVMLDEI INYVQSLQCQ VEFLSMKLSN MNPRMDFNAE SLLSKNMFQS AESLHHNMHP  360
SENSAAFPYE FQSQQCSNGY MARNVNIMQL PHMEEFVEQT PQVPTFFEDD LHSVIQMGFG  420
QIQGQNLPGN ISSAQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PKKKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-39HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760399.10.0PREDICTED: transcription factor bHLH78-like
TrEMBLA0A1U7VDK90.0A0A1U7VDK9_NICSY; transcription factor bHLH78-like
STRINGXP_009760399.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-79bHLH family protein