PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759911.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 356aa    MW: 40006.2 Da    PI: 7.5726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085148170123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009759911.1 148 YECKTCNRTFPSFQALGGHRASH 170
                     99**********99999998887 PP
2zf-C2H214.20.00013234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009759911.1 234 HTCSYCGAEFNSGQALGGHMRRH 256
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-13147172IPR007087Zinc finger, C2H2
SuperFamilySSF576675.58E-8147170No hitNo description
PROSITE profilePS5015711.843148175IPR007087Zinc finger, C2H2
SMARTSM003550.052148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576675.58E-8229256No hitNo description
PROSITE profilePS5015710.221234261IPR007087Zinc finger, C2H2
SMARTSM003550.0084234256IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-12234258IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPIPFTIAVH SSTDDDGGDD IINNNNNNNI  60
SQPSATSTEN FPNDDVPTEE EEETAKCLIL LSQGGHPSSR QRFIESPPSK LFDLFNDDMG  120
LYPSKFNSKR YVETTNIGNG AKAGTYVYEC KTCNRTFPSF QALGGHRASH KKPKPLTIEP  180
RKTFFYFSDQ DEPSPTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG  240
AEFNSGQALG GHMRRHRGGA NTSLCLSPLN TKAFSFEDSP NNLKKPRNIG LSLDLNLPAP  300
EDQNHQSRNF QYPPNYPIAI EQQQDQKQTQ KQQQQQQQEQ TALVLSTTRQ LIDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759911.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_016464322.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3ZJ480.0A0A1S3ZJ48_TOBAC; zinc finger protein ZAT5-like
TrEMBLA0A1U7V4L60.0A0A1U7V4L6_NICSY; zinc finger protein ZAT5-like
STRINGXP_009759911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-51C2H2 family protein