PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 278aa MW: 30709.2 Da PI: 6.5055

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.7e-16	190	225	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp++Rrgp g++tLCnaCGl ++ kg XP_009759908.1 190 CIHCGTSSkdTPMMRRGPAGPRTLCNACGLTWANKG 225 99*******************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.212	64	99	IPR010399	Tify domain
SMART	SM00979	1.1E-6	64	99	IPR010399	Tify domain
Pfam	PF06200	4.0E-9	68	98	IPR010399	Tify domain
PROSITE profile	PS51017	12.302	131	173	IPR010402	CCT domain
Pfam	PF06203	3.1E-13	131	173	IPR010402	CCT domain
SMART	SM00401	5.3E-9	184	237	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.42E-12	186	236	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.5E-14	189	230	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	5.8E-14	190	225	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.853	190	242	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	190	217	IPR000679	Zinc finger, GATA-type
CDD	cd00202	4.21E-14	190	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MNSDIQALNV DDHFSAAGEE VPAGTDKAVD FPIGYEGGVG GVKVTMPHHY TVYSASDHVA 60 FQNGEANLNQ LTLSFRGQVF VFDGVTTHKV QSVFQLLGGF EYSPGMQTVG LASPNQEDSV 120 DYPLHCADPK RLESLIRFRE KRKRRCYGKK IRYDVRQEVA FRMQRKNGQF ARKGSGEPKQ 180 DDNPPEETWC IHCGTSSKDT PMMRRGPAGP RTLCNACGLT WANKGIMRNL YTASNDNTLL 240 TELEDEDHSN SDYGAPPRYL SCQVSSSASD SSVLAAQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU041360	2e-40	CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBank	HG975443	2e-40	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	2e-40	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759908.1	0.0	PREDICTED: GATA transcription factor 25-like
Refseq	XP_009759909.1	0.0	PREDICTED: GATA transcription factor 25-like
Refseq	XP_009759910.1	0.0	PREDICTED: GATA transcription factor 25-like
Refseq	XP_016508030.1	0.0	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-56	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S4D3L6	0.0	A0A1S4D3L6_TOBAC; GATA transcription factor 25-like
TrEMBL	A0A1U7VDJ8	0.0	A0A1U7VDJ8_NICSY; GATA transcription factor 25-like
STRING	XP_009759908.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14030	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	8e-59	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]