PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759907.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 332aa    MW: 36430.7 Da    PI: 4.8567
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.6e-16207243135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  XP_009759907.1 207 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 243
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.45269104IPR010399Tify domain
SMARTSM009797.2E-769104IPR010399Tify domain
PfamPF062003.7E-973103IPR010399Tify domain
PfamPF062039.0E-15134175IPR010402CCT domain
PROSITE profilePS5101712.689134176IPR010402CCT domain
SMARTSM004011.3E-10201254IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-11204252No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13206248IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.85E-15206253No hitNo description
PROSITE profilePS501148.682206259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
PfamPF003208.7E-14207243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMTANPRPLQ ARLYEDHAPL QSIQMEEEEE DDDGTYEDDG GEETMDEAEE IRTKVLNHHQ  60
YGGGGGVVEV SRSSELTLAF EGEVYVFPAV TPEKVQAVLL LLGGCDIPTA VPTVEVPFDN  120
KVEDFPKQVN LSRRFASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKASS  180
GSSNCDSAKS SLEGDGTQLS ETVPGKCHHC GVSENCTPAM RRGPDGPRTL CNACGLKWAN  240
KGTLRDLSKG SRKLSVEPKE LGNPDNPTKA FAEGCLDHCA DVEKNLFSAR SNLANEIPVG  300
IISPSSDLVE QETLVDIGNA SKTEIDIPAN FD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0413605e-51CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBankHG9755165e-51HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759907.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016508029.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL77e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4D4290.0A0A1S4D429_TOBAC; GATA transcription factor 19-like
TrEMBLA0A1U7UV440.0A0A1U7UV44_NICSY; GATA transcription factor 24-like
STRINGXP_009759907.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-66ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]