PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009759207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 19571.5 Da PI: 9.4806 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F L H+r+H XP_009759207.1 84 HECSFCGEEFALGQALGGHMRKH 106 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.0E-8 | 36 | 106 | No hit | No description |
Pfam | PF13912 | 4.7E-11 | 38 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.5E-4 | 82 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.764 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-8 | 84 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MALKRSREEE TVSVEKLAMA NCVDIMKRNQ SKGRSKIFEC KTCKKQFDSF QALGGHRASH 60 KNTAIKLMLM STFPNELPGK PKKHECSFCG EEFALGQALG GHMRKHRDQL NQQQQYQYKK 120 KKVQEKSDVS DQEDGKEKKD LGSEGIFFLD LNLTPYENEL MAGIVPVRSW L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759207.1 | 1e-126 | PREDICTED: zinc finger protein ZAT8-like | ||||
Refseq | XP_016472191.1 | 1e-126 | PREDICTED: zinc finger protein ZAT8-like | ||||
TrEMBL | A0A1S4A6J9 | 1e-125 | A0A1S4A6J9_TOBAC; zinc finger protein ZAT8-like | ||||
TrEMBL | A0A1U7UT09 | 1e-125 | A0A1U7UT09_NICSY; zinc finger protein ZAT8-like | ||||
STRING | XP_009759207.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-33 | C2H2 family protein |