PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758972.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 297aa    MW: 34279.9 Da    PI: 4.9741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-2097147155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp++   ++r++lg+f taeeAa  +++a+ +++g
  XP_009758972.1  97 KKFRGVRQRP-WGKWAAEIRDPVK---KTRIWLGTFETAEEAAMVYDQAAIQIRG 147
                     59********.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-3397154No hitNo description
SMARTSM003802.2E-3898161IPR001471AP2/ERF domain
PROSITE profilePS5103223.26198155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3198155IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2298155IPR016177DNA-binding domain
PfamPF008477.2E-1398147IPR001471AP2/ERF domain
PRINTSPR003675.5E-1199110IPR001471AP2/ERF domain
PRINTSPR003675.5E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEGKFSQSIK KCVVHRSINT KHENKLTPKV VRICYTDCDA TDSSSDDDDY LEKKRVKKYV  60
TEIRFEKKMS CGDVKKSSNL RQKKKKMMDV KTNENVKKFR GVRQRPWGKW AAEIRDPVKK  120
TRIWLGTFET AEEAAMVYDQ AAIQIRGPDA LTNFMKPPVK KESVITSLSD YDSTGESENL  180
CSPTSVLRHN DNNIGVTATT IVTNEEMKDD RKRMEFVMQN DQNKILLDDN LPLMDQCFLK  240
DFFDFRSPSP LMDDVLPAFC DDIDFPEMDF LDGNGILDED LESCTWDVND FLEDHCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2397154159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2397154462ATERF1
3gcc_A1e-2397154462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758972.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLA0A1U7USC60.0A0A1U7USC6_NICSY; ethylene-responsive transcription factor CRF3-like
STRINGXP_009758972.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-38cytokinin response factor 6