PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758508.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 265aa    MW: 30056.4 Da    PI: 4.8894
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-091962282355
                     SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp++ee+ +L++ +gL+ +q+ +WF N+R ++
  XP_009758508.1 196 PYPTEEEKNRLSEITGLDPKQINNWFINQRKRH 228
                     8*****************************885 PP
2ELK36.41.1e-12148169122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK+ L+rKYsgyL+sL++EF+
  XP_009758508.1 148 ELKETLMRKYSGYLSSLRKEFL 169
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.2E-10137IPR005540KNOX1
PfamPF037901.2E-15136IPR005540KNOX1
SMARTSM012568.3E-264293IPR005541KNOX2
PfamPF037912.3E-254592IPR005541KNOX2
PROSITE profilePS5121311.243148168IPR005539ELK domain
SMARTSM011885.6E-7148169IPR005539ELK domain
PfamPF037891.2E-9148169IPR005539ELK domain
PROSITE profilePS5007112.584168231IPR001356Homeobox domain
SuperFamilySSF466891.41E-19170241IPR009057Homeodomain-like
SMARTSM003893.6E-13170235IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-27173234IPR009057Homeodomain-like
CDDcd000861.63E-12180232No hitNo description
PfamPF059203.3E-16188227IPR008422Homeobox KN domain
PROSITE patternPS000270206229IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
NHPLYPNLLS AYLQCRKVGA PQEMASILEE ISKENHLISS CHNTEIGTDP ELDDFMESYC  60
AVLLKYKEEL SKPFDEATTF LNNIESQLSS LCKENLTTTT TTTTSFNSNN NYLSDEAGGT  120
SDEDLGCREM EAVDSTQESP ANREGDNELK ETLMRKYSGY LSSLRKEFLK KRKKGKLPKD  180
ARTALLDWWN THYRWPYPTE EEKNRLSEIT GLDPKQINNW FINQRKRHWR PSEDMKYALM  240
EGVSSGSIAG SMYFDGAGGT GSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163172LRKEFLKKRK
2169173KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440520.0AF544052.1 Nicotiana tabacum knotted 1 (kn1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312933.10.0homeobox protein knotted-1-like 1
RefseqXP_009758508.10.0PREDICTED: homeobox protein knotted-1-like 1, partial
RefseqXP_016499152.10.0PREDICTED: homeobox protein knotted-1-like 1
RefseqXP_016499153.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-100KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A1U7UWF20.0A0A1U7UWF2_NICSY; homeobox protein knotted-1-like 1
TrEMBLQ717U30.0Q717U3_TOBAC; Knotted 1
STRINGXP_009758508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.16e-76KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]