PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009757856.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27741.3 Da PI: 6.6736 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.2e-12 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+ll + K +Ka+ L k+v+ +++L XP_009757856.1 69 KNHKEAERRRRERINSHLDRLRTLLSCN-----SKTDKASLLAKVVQRVREL 115 78***********************997.....7************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.364 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-4 | 69 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 69 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-13 | 70 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-11 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQQENMLENL DFGHHLTQNK SNENMGEYGF DIPAIKSFCS SSFYSQAVKF QETVESITTP 60 EARAIAASKN HKEAERRRRE RINSHLDRLR TLLSCNSKTD KASLLAKVVQ RVRELKQQTS 120 EIMQLDETNF PSETDEITVL SSNDCLADGR LLIKASLCCE DRFDLIPDLI ETLKSLGLSP 180 LRAEMVTLGG RIRNVIVLAV DKDHSSDESL LFLRDTLRSI VQPSSYGTGE RSKRRRVLDQ 240 GTSNY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | ERRRRE |
2 | 232 | 236 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 9e-83 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757856.1 | 0.0 | PREDICTED: transcription factor bHLH106-like | ||||
Refseq | XP_016458271.1 | 0.0 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 3e-62 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1S3Z1D5 | 1e-180 | A0A1S3Z1D5_TOBAC; transcription factor bHLH106-like | ||||
TrEMBL | A0A1U7UYN9 | 1e-180 | A0A1U7UYN9_NICSY; transcription factor bHLH106-like | ||||
STRING | XP_009757856.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12841 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-64 | bHLH family protein |
Publications ? help Back to Top | |||
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