PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757612.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 483aa    MW: 53580.7 Da    PI: 6.791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17303349455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  XP_009757612.1 303 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 349
                     6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-20297364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.476299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-18302353No hitNo description
PfamPF000101.2E-14303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-20303357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNPCLPEWNI EAELPVHQKK PMGFDHELVE LLWRNGEVVL HSQTHKKQQG YDPNECRQFN  60
KHDQQTIRDI VSCGNHTSLI QDDETISWLN CPIDESFEKE FCSPFLSEIS TNPIEADKSI  120
RQSEDNKAFK FDPLEINHVF PHSHHSSFDP NPMPPPRFHN SVSAQKSVKN NLKEGSVMTV  180
GSSHCGSNQV AIDADTSRFS SSANIGLSAA MITDYTGKVS PQSDTMDRDT FEPANTSSSG  240
GSGSSYARTC NLSAATNSQS HKRKSRDGEE PECQSKAGEL ESAGGNKSAQ KSGTARRSRA  300
AEVHNLSERR RRDRINEKMK ALQELLPHST KTDKASMLDE AIEYLKSLQM QLQMMWMGSG  360
MASMMFPGVQ HYMSRIGMGM GSPTVPSIHN AMHLARLPLV DSTIPMNTAA PNQAAICQNS  420
MLNSVNYQRH LQNPNFQDQY ASYMGFHPLQ GASQQMNIFG LGSQTAQQSQ QLPHPTNSNA  480
PNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757612.10.0PREDICTED: transcription factor PIF4
RefseqXP_009757613.10.0PREDICTED: transcription factor PIF4
RefseqXP_016471316.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_016471375.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A1S4A4190.0A0A1S4A419_TOBAC; transcription factor PIF4-like
TrEMBLA0A1U7UTT30.0A0A1U7UTT3_NICSY; transcription factor PIF4
STRINGXP_009757612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-50phytochrome interacting factor 4