PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009757607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 458aa MW: 51240.3 Da PI: 6.0813 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 121 | 141 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH XP_009757607.1 121 CKECGKEFSSTQALSGHLRTH 141 ********************9 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H XP_009757607.1 151 HICEKCGKGFASTRALYGHMKVH 173 68*******************99 PP | |||||||
3 | zf-C2H2 | 10.7 | 0.0017 | 381 | 403 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k F++ +L H r H XP_009757607.1 381 HKCPICFKIFPSGQSLGGHKRAH 403 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.065 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.863 | 119 | 146 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 119 | 141 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.99E-11 | 120 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-6 | 121 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.8E-7 | 121 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0055 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 151 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.8E-5 | 378 | 405 | No hit | No description |
Pfam | PF13912 | 4.3E-9 | 381 | 404 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 381 | 403 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 381 | 403 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 383 | 403 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MEETPEQKHR CRFCNQSCSS GRSLGGHMRV HLDLISAEKK QKIEAENKMG SEEEEEGDNH 60 FDNLSISEQS DCSMSQEKGN NISTNDVDDI DSVGYGLREN PRKSWRVSEL KLSSMKTKNL 120 CKECGKEFSS TQALSGHLRT HSKKGTTEKS HICEKCGKGF ASTRALYGHM KVHVKRSRDD 180 QESESSKQSL SDFETVCPIR KKRSKIKYKT DANPESSYAI SEVEETEEAA KTLMMLSCGV 240 RDWDEYLSIS KPLKNENVSI PETKAGCSDS GCVDGYEKKC ENEVINDEFS GKLMMINTEI 300 TRVCYSTTIL GLDNDPRSDL AFLNSCSVKN AGVDFQVLNP EKNFVSDMVN SQLERIDNSP 360 VELGTIGVMR TSPEPIKSKD HKCPICFKIF PSGQSLGGHK RAHYTGFNES KTKETMVKKL 420 EDLTDNHRSF DLNNPVNVVD GGEKDVVELN LWWVGGSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757607.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
Refseq | XP_016446098.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S3Y1J7 | 0.0 | A0A1S3Y1J7_TOBAC; zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1U7UN66 | 0.0 | A0A1U7UN66_NICSY; zinc finger protein ZAT1-like | ||||
STRING | XP_009757607.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-14 | C2H2-like zinc finger protein |