PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757584.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 556aa    MW: 60422.8 Da    PI: 8.1433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16260309255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  XP_009757584.1 260 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 309
                     889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-23255326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-18256326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-15260313No hitNo description
SMARTSM003538.4E-13264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PTPPQAGGFL KTHDFLQPLE QAEKALRKEE  60
AKVEVVAVEK PPAPVASPSV EHILPGGIGT YSISYLHQRI PKPEASLFAV AQATSTDRND  120
ENSNCSSYTG GSGFTLWDES AVKGKTGKEN SGGDRHALRE AGLNTGGGQP TTSLEWQSQS  180
SSNHKHNTTA ISSLSSARQS SPLKTQSFVH MITSAKNAQD DDDDDDEDFV IKKEPQSHPR  240
GNLSVKVDGE GNDKKPNTPR SKHSATEQRR RSKINDRFQM LRGIIPNSDQ KRDKASFLLE  300
VIEYIHFLQE KVHKYEESYQ GWENEPLKLP LSKCHRTTQG ASNHPQGTIN ASGAAPTYAV  360
KFDENIMGIS STNPFNAQKV EPNISTTSLK ESSQRPGLTN KATTPSMSPN TFPFCGASTA  420
ALYSSKLTAD TAKLESKSHP QFSVSRSHMT DYAIPNANSK GQDLSIESGT ISISSAYSQG  480
LLNTLTLALQ NSGVDLSQAN ISVQIDLGKR ANGRLHSSAS TVKGDDVSTS NQPIPKSIST  540
STREESDRAF KRLKTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757584.10.0PREDICTED: transcription factor BIM1 isoform X1
RefseqXP_016514051.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A1S4DKY60.0A0A1S4DKY6_TOBAC; transcription factor BIM1-like isoform X1
TrEMBLA0A1U7V5S00.0A0A1U7V5S0_NICSY; transcription factor BIM1 isoform X1
STRINGXP_009757584.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-107bHLH family protein