PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009757518.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 270aa MW: 30761.4 Da PI: 7.3444

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009757518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	102	154	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er RR+++ + + Lr+llP + ++K s ++ + Av+YI++L+ XP_009757518.1 102 KKVVHRNVERHRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLR 154 6788***********************65..******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-14	98	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.19E-9	99	158	No hit	No description
PROSITE profile	PS50888	13.211	101	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-10	102	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0013	107	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDNYLWEIFS SKQNTEQDHD HDHHHQLLQI PNFQLNGFCQ QDQIPNQDLI GGPREISSVN 60 SNNNYASVPT TMSSVNRSNL DNSNKGLIRR PESTISSTDD SKKVVHRNVE RHRRQEMANL 120 LTSLRSLLPL EFIKGKRSAS DHMQIAVNYI RHLRKNIEEL DNRRKQIKNS LDNLGAENGS 180 SSTCYVHNNS VAVNTCQDGM EILINVNSHK EEMFSLSKVL RWLLQEGLNV VSCVNSKQDE 240 WTLIRIQCQV SDISGVSTVG LQKKLTDLIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757518.1	0.0	PREDICTED: transcription factor bHLH118-like
Refseq	XP_009757519.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1U7UTJ0	0.0	A0A1U7UTJ0_NICSY; transcription factor bHLH118-like
STRING	XP_009757518.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	6e-24	bHLH family protein