PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009757456.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 485aa MW: 54638.7 Da PI: 6.2711 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.8 | 3.9e-34 | 14 | 106 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d ++++++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ + weF+++ F +g+k+ll++ XP_009757456.1 14 FLCKTYDMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGFLRGHKHLLKT 99 9***************************************************************9987.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k + XP_009757456.1 100 ISRRKPS 106 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-36 | 8 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.43E-33 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.9E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.6E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.6E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.6E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MEAIHEIGNS PPPFLCKTYD MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN 60 NFSSFVRQLN TYGYRKVDPD CWEFANEGFL RGHKHLLKTI SRRKPSQMQV HQDTTSQVQS 120 VSTESCVEVG KFGIEEEVER LKRDKNVHME ELVKLKQQQQ ATDHCLENVG QRLHLMEQRQ 180 QQTMSFLAKA LQSPGFIAEL IHQQNEGNRR IPGMKKKRRF PNQEEEIYAG KPVSTMHDRQ 240 IVRYQPLMNE AAKALLQKIL KTNASGRLET KVKNTNGVLT NHGHAFENTL DSAGICSRIS 300 GVTLPQLPTS SQSHLTADSG FPFNSNLSAI PEIQYSPSLV PWEAKVPHFP GLNALNFQTD 360 HVLPEVSEGY GINTLDNFGI TDLKRLGTGD LPDIDRMQGI VDGVTSIVPD RYSTDTDIDI 420 FLDEMSKLPG INDIFWDQIL SASPLTGDKH EIGSLALGDG LAKEEDVPGI QESAFDKKKH 480 MSYLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 12 | 103 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 12 | 103 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 12 | 103 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 218 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757456.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Refseq | XP_009757457.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Refseq | XP_009757458.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Refseq | XP_009757460.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Refseq | XP_009757461.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Swissprot | Q84T61 | 1e-133 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A1U7UMQ4 | 0.0 | A0A1U7UMQ4_NICSY; heat stress transcription factor A-1-like | ||||
STRING | XP_009757456.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5054 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-119 | heat shock factor 3 |
Publications ? help Back to Top | |||
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