PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009632043.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 243aa    MW: 27785.6 Da    PI: 6.5107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009632043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1468114354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+E+rRRdriN  +++Lr+l+P +     +K++Ka+ L+ +ve++k+L
  XP_009632043.1  68 RSHSEAEKRRRDRINAQLSTLRKLIPMS-----EKMDKAALLRSVVEHVKDL 114
                     78*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.32365114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1468125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1268114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-1168116No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1568118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1371120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.5E-4153219No hitNo description
CDDcd048732.54E-6153215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMDNSSCSEY WPEIETETHF HHFQEVAASP FLLPLVPNSC DDTSFQLYEN PCYWSQQFEE  60
DTSASASRSH SEAEKRRRDR INAQLSTLRK LIPMSEKMDK AALLRSVVEH VKDLKERAKE  120
ISKVVNTPTD IDEVIIEHLD EDENSSNSII LKVCLSCDDR PELFSELNRA LKNLKLTTEE  180
ANITSLGVRI KCVFVLKSVN GVCLNSLKQS LRVVLSRIAI SLSTSNYRIK SKRQRFFLPA  240
NFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234KSKRQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-36HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009632043.11e-179PREDICTED: transcription factor bHLH51-like
RefseqXP_016503104.11e-179PREDICTED: transcription factor bHLH51-like
TrEMBLA0A1S4CQ591e-177A0A1S4CQ59_TOBAC; transcription factor bHLH51-like
STRINGXP_009632043.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-37bHLH family protein