PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009632042.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 696aa    MW: 77697.1 Da    PI: 5.326
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009632042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.81.3e-43702161137
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ + + +++g+ +++ ++ss++
  XP_009632042.1  70 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHSQVTGATGGTPTTMVTSSSSH 164
                     6899*****************************************************************95555554455555544444444433 PP

          DUF822  96 ..........sslkssalaspvesysaspksssfpspssldsislasaasll 137
                               ++ + s ++  ++++++++ks+ +p +s +ds s+a ++++ 
  XP_009632042.1 165 iptqhtppasLKGTPSGFQNTANHSACQMKSVFIPTSSPYDSSSTARSQTSA 216
                     2110000103344557888889999999999999999999999887654443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.8E-3771209IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.78E-180253690IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.6E-197256690IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.9E-107262682IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70293307IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70314332IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70336357IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8419428IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.5E-70429451IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70502521IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70536552IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70553564IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-70571594IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8574584IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.5E-70611633IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8662676IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.6E-8677691IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MASEMQRYVT NEDDEEMDVK EEDDEDEDED DEDKNGTMPA MAGFDGAHGS SSSNMFQHHQ  60
QYQEPPTPCG GSRRCRPLEE KERTKLRERQ RRAITAKILA GLRRHGNYNL RVRADINDVI  120
AALAREAGWV VLPDGTTFPS KSHSQVTGAT GGTPTTMVTS SSSHIPTQHT PPASLKGTPS  180
GFQNTANHSA CQMKSVFIPT SSPYDSSSTA RSQTSAMVAD GQDTQNDPFL VGSGDSIDKQ  240
VIDIHTKLQE RDFAGTPYIP VYVMLPLGVI NMKSELVDAD GLVKQLRVLK STNVDGVMVD  300
CWWGIVEANA PQDYNWNGYK RLFQVVREHK LKIKVVMSFH ECGGNIGDDV CIPLPHWVSE  360
IGRSNPDIYF TDRAGRRNPE CLSWGIDKER VLKGRTAVEV YFDYMRSFRV EFDEFFEDGI  420
ISMVEVGLGP CGELRYPSNP VKHGWRYPGV GEFQCYDQYL LKGLRKAAEA RGHSFWARGP  480
DNAGSYNSQP QETGFFCDGG DYDGYYGRFF LNWYSQVLVD HADRVLSLAK LAFDGTCIAA  540
KLSGIHWWYK TSSHAAELTA GFYNPSNRDG YVAIAAMLKK HGAALNFKCA EMSMLEQAVD  600
FSEALGDPEG LAWQVLNAAW DVSLPVCSEN ALLCHDRGGY NCLLEKAKLL NDPDGKHIFA  660
FTYLRLGPLL IDGQNFMEFE RFVKRMHGEA VLEFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-14925868911444BETA-AMYLASE
1byb_A1e-14925868911444BETA-AMYLASE
1byc_A1e-14925868911444BETA-AMYLASE
1byd_A1e-14925868911444BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183730.0AJ718373.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT43-4-510, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009632042.10.0PREDICTED: beta-amylase 7-like isoform X2
RefseqXP_016484153.10.0PREDICTED: beta-amylase 7-like isoform X2
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1S4B5T20.0A0A1S4B5T2_TOBAC; Beta-amylase
STRINGXP_009632039.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]