PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009632036.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 243aa MW: 27196.5 Da PI: 9.9753

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009632036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.6	2.4e-29	90	146	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ e+k+ ksrkpylheSRh+hA+rR+R gGrF XP_009632036.1 90 EEPMYVNAKQYHGILRRRQLRAKAVLEQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 146 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.3E-33	88	149	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.792	89	149	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	91	146	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-22	92	114	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-22	123	146	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDPPLLADSD CKRDGKRVEF MPPIMGENLR AANQFELMPP SIAFRSYPYS EVPQYSGGNV 60 AAAFGESTVH QNIERSVHNG RMILPLEVKE EPMYVNAKQY HGILRRRQLR AKAVLEQKVV 120 KSRKPYLHES RHRHAMRRAR DGGGRFLNTK KKIQLTTINN NNNGNTNATP SSKGKGSSAS 180 EVSSMDSYSG HIGSSNSTAH VQGFQFQGIH NTENPQLGCH YQWNLNDNHC NCMQSGASNI 240 QPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	90	152	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RHRHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018622254.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q945M9	1e-27	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A1U7VYE0	1e-144	A0A1U7VYE0_NICSY; nuclear transcription factor Y subunit A-7-like isoform X1
STRING	XP_009632036.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13392	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	3e-29	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]