PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631985.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 261aa    MW: 27675.3 Da    PI: 5.4319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.87.2e-07167193430
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                     +h+ +Er RR++i +++  L++l+P +
  XP_009631985.1 167 SHSLAERARREKISERMKILQDLVPGC 193
                     8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.66E-5161202No hitNo description
SuperFamilySSF474593.53E-8161195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.82163214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-8166199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-4167194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTDLLEAAAN  60
SVNESTVTEQ SGRSGGGGGT AAVRKRDVNS EDDSSKLVST SDANDLQDGS VAKRQKASES  120
KEENGGSKVE AESSSRTVNK GTEQSSKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKFLSMK LEAVNSRMSH PIDTFPSKDL APSAFDATGM IFGAQAPREY  240
AQGAQSEWLH MQVGSSFDRA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755157e-56HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631985.10.0PREDICTED: transcription factor bHLH79 isoform X3
RefseqXP_016499459.10.0PREDICTED: transcription factor bHLH79-like isoform X3
SwissprotQ9LV175e-62BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A1S4CES70.0A0A1S4CES7_TOBAC; transcription factor bHLH79-like isoform X3
STRINGXP_009631983.11e-165(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]