PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631985.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 27675.3 Da PI: 5.4319 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.8 | 7.2e-07 | 167 | 193 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + XP_009631985.1 167 SHSLAERARREKISERMKILQDLVPGC 193 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.66E-5 | 161 | 202 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-8 | 161 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.82 | 163 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-8 | 166 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-4 | 167 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTDLLEAAAN 60 SVNESTVTEQ SGRSGGGGGT AAVRKRDVNS EDDSSKLVST SDANDLQDGS VAKRQKASES 120 KEENGGSKVE AESSSRTVNK GTEQSSKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS 180 ERMKILQDLV PGCNKFLSMK LEAVNSRMSH PIDTFPSKDL APSAFDATGM IFGAQAPREY 240 AQGAQSEWLH MQVGSSFDRA T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 7e-56 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631985.1 | 0.0 | PREDICTED: transcription factor bHLH79 isoform X3 | ||||
Refseq | XP_016499459.1 | 0.0 | PREDICTED: transcription factor bHLH79-like isoform X3 | ||||
Swissprot | Q9LV17 | 5e-62 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A1S4CES7 | 0.0 | A0A1S4CES7_TOBAC; transcription factor bHLH79-like isoform X3 | ||||
STRING | XP_009631983.1 | 1e-165 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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