PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009631984.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 283aa MW: 30171.3 Da PI: 5.2351

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009631984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_009631984.1 166 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-9	160	217	No hit	No description
SuperFamily	SSF47459	5.63E-18	160	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-18	162	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTDLLEAAAN 60 SVNESTVTEQ SGRSGGGGGT AAVRKRDVNS EDDSSKLVST SDANDLDGSV AKRQKASESK 120 EENGGSKVEA ESSSRTVNKG TEQSSKPEPP KDYIHVRARR GQATDSHSLA ERARREKISE 180 RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS MKLEAVNSRM SHPIDTFPSK 240 DLAPSAFDAT GMIFGAQAPR EYAQGAQSEW LHMQVGSSFD RAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631984.1	0.0	PREDICTED: transcription factor bHLH79 isoform X2
Refseq	XP_016499458.1	0.0	PREDICTED: transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	9e-85	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1S4CEA1	0.0	A0A1S4CEA1_TOBAC; transcription factor bHLH79-like isoform X2
STRING	XP_009631983.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-84	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]