PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009631938.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 32378.1 Da PI: 5.9238

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009631938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	90	143	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k XP_009631938.1 90 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 143 4557899*********************************************99 PP
2	HD-ZIP_I/II	127.6	5.2e-41	89	180	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk +n++L++++++L++el+ XP_009631938.1 89 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKIDNDALKTQNKKLHSELQ 180 69***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-18	86	147	IPR009057	Homeodomain-like
SMART	SM00389	8.2E-18	88	149	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.18	89	145	IPR001356	Homeobox domain
Pfam	PF00046	8.0E-15	90	143	IPR001356	Homeobox domain
CDD	cd00086	2.15E-15	90	146	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-18	92	152	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	116	125	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	125	141	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-14	145	183	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MLFSSTMAFV PSTAQETSSV NFRNHEAAND DLPSSFPSHV FPSSCAPQQE FQGISPLLMR 60 RAMSFDHNQE SRVDDDMSDD DGSSHLLGEK KRRLNLEQVK ALERSFEMGN KLEPERKMQL 120 ARALGLKPRQ IAIWFQNRRA RCKTKQLEKD YEILKRQCDK LKIDNDALKT QNKKLHSELQ 180 LLSLGNRESA GDTPPILFNL NKENEGCNWN INGSGDENNS TIDVNLGTTT TRTSSTNSPL 240 NSHDIFPTAY KVEQTVNEEG FCNMFTNVED QTNFWPLPVQ QHFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARCKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631938.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
Refseq	XP_016451115.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBL	A0A1S3YG67	0.0	A0A1S3YG67_TOBAC; homeobox-leucine zipper protein HAT7-like isoform X1
STRING	XP_009631938.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-55	homeobox 3