PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 471aa MW: 51818.2 Da PI: 7.3244 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.2e-06 | 10 | 49 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C+ ++++ + l+C+ ++ lC C ++ H+ H XP_009631919.1 10 RPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 49 78***************************99544555555 PP | |||||||
2 | zf-B_box | 18.4 | 4.4e-06 | 52 | 93 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42 ++C+++ ++++++ C +++ lC++C H + H+++p+ XP_009631919.1 52 SQICDNCCSEPVSIRCATDNLVLCQECDWDAHGScaHDRTPV 93 579**************************99*5599998875 PP | |||||||
3 | CCT | 64.1 | 4.2e-22 | 423 | 466 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ XP_009631919.1 423 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 466 7789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.442 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.0E-11 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-7 | 10 | 42 | No hit | No description |
PROSITE profile | PS50119 | 9.229 | 50 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.58E-6 | 54 | 93 | No hit | No description |
PROSITE profile | PS51017 | 14.912 | 423 | 465 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.8E-16 | 423 | 465 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MSQRNTGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHL RSQICDNCCS 60 EPVSIRCATD NLVLCQECDW DAHGSCAHDR TPVEGFSGCP CASELASAWG LDVEAKKPPT 120 PTHLQPTWNG FLEPCNWMCK DVIPPPSVLL QDLMVPNANN NSGIYSTTRE VGRKQNPTCG 180 KQKQVILKQL IELFKRDFAD GVGGGSEDLV PKTPNGSSDW QGNVNVTEGS DAVMGGANQQ 240 LEPQSVPFTS LLMMQKPHNS KDSDRMVQGN ILSSGNSYVQ NTQIWDFNLG QLRSHEQSSS 300 VEADYSESDM AYMMKSYGEL IKGTSLATSK GLELSGINCS VAHEDMTALS NNSNNRGGSQ 360 GPATSESNNL PIIKLSSDSG YTKRKCCGVS KDLNFMEQSI FVGGENTGEE ILKADMELLA 420 KNRGNAMQRY KEKKKTRRYD KHIRYESRKA RADTRKRVKG RFVKANEAPD G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-76 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 2e-76 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631919.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
Refseq | XP_009631920.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A1S4CKC3 | 0.0 | A0A1S4CKC3_TOBAC; zinc finger protein CONSTANS-LIKE 14-like | ||||
STRING | XP_009631919.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6703 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.1 | 8e-99 | B-box type zinc finger protein with CCT domain |