PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 618aa MW: 70024.6 Da PI: 9.104 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.3e-24 | 119 | 219 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 k+ltpsdv+++g l++pk+ a+e+ + + ++l+ +d++g +W++++ yr++s+r+++++GW++Fv+a++L +gD+++F + ++ XP_009631861.1 119 SKKLTPSDVNTHGGLSIPKQLADECfpplnndQDFP--AQDLVAKDLNGLEWKFRHVYRGQSRRHLISNGWSRFVSAKKLVAGDTLIFV--RGKN 209 599************************998653333..348************************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 el+v v+r+ XP_009631861.1 210 YELYVAVRRA 219 999**99986 PP | |||||||
2 | Auxin_resp | 84.7 | 1.9e-28 | 244 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 a ha+s++++F+++Y+P+++++ F++++++++ka ++ + vGm f m fe+ + r+ sGt+v+v+d+dp+rWp+S Wr+Lk XP_009631861.1 244 AYHAVSSGTMFTIYYRPWTCPAAFIIPYNQYMKASEIDYEVGMTFNMPFESHELDCGRTvcpifSGTIVDVKDFDPIRWPGSDWRCLK 331 689************************************************98876654457789*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-29 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-37 | 111 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-21 | 118 | 218 | No hit | No description |
PROSITE profile | PS50863 | 14.015 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-22 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-21 | 119 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-25 | 244 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.7E-8 | 478 | 604 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 16.751 | 526 | 608 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MGNDDKGRNS GLHRELWLAC SGPLVIVPSS GDMVFYYPQG HIEQIEACMN EDGLMPMPAY 60 NVPYKILCRV VSVRLQAESN TDEVFAEITL LPHLGTREPI LAERSPLFSR AKSDVHTYSK 120 KLTPSDVNTH GGLSIPKQLA DECFPPLNND QDFPAQDLVA KDLNGLEWKF RHVYRGQSRR 180 HLISNGWSRF VSAKKLVAGD TLIFVRGKNY ELYVAVRRAK KQQTSSSTSI LSSHYMQHGM 240 LSNAYHAVSS GTMFTIYYRP WTCPAAFIIP YNQYMKASEI DYEVGMTFNM PFESHELDCG 300 RTVCPIFSGT IVDVKDFDPI RWPGSDWRCL KVKWNHAKLM PVRPERVSPW SIVAIGITKR 360 KRRSFSSYPS KAQPLDPANP FGVKDCLMKS SVEHSPPWNS RVLQGQEKAV NAYEENAFRR 420 PHDLRQPPQR KLRWRRGQVR LENQQHNHIL DPWLDFIGKE VHGTSPSSNG FSNLQSSKIP 480 SFASESLSIP KIVDYRNSNS KAASKTVNFL EQSKSTSGNS DTQCSRSCTK VLKYGCALGR 540 SIDMSRVKGY GELISELDKL FGFEGSLLDG SKDWHVTYQD REGNTKLLGD YPWSDFQAMV 600 RKMFICPIGA DYLADRSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-114 | 11 | 352 | 18 | 352 | Auxin response factor 1 |
4ldw_A | 1e-114 | 11 | 352 | 18 | 352 | Auxin response factor 1 |
4ldw_B | 1e-114 | 11 | 352 | 18 | 352 | Auxin response factor 1 |
4ldx_A | 1e-114 | 11 | 352 | 18 | 352 | Auxin response factor 1 |
4ldx_B | 1e-114 | 11 | 352 | 18 | 352 | Auxin response factor 1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340258 | 0.0 | DQ340258.1 Nicotiana tabacum ARF2-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631861.1 | 0.0 | PREDICTED: auxin response factor 24-like isoform X3 | ||||
TrEMBL | A0A1S3XP51 | 0.0 | A0A1S3XP51_TOBAC; Auxin response factor | ||||
STRING | XP_009631858.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.3 | 1e-131 | auxin response factor 1 |