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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 34257.9 Da PI: 4.9847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp++ ++r++lg+f taeeAa +++a+ +++g XP_009631670.1 98 KKFRGVRQRP-WGKWAAEIRDPVK---KTRIWLGTFETAEEAAMVYDQAAIQIRG 148 59********.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-33 | 98 | 155 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-22 | 99 | 156 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.261 | 99 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-31 | 99 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-38 | 99 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEGKFSQSIK KCVVHRSIST KHENKLTPKV VRICYTDCDA TDSSSDDDFD DKEKKRVRKY 60 VTEIRLEKKV SCGDVKKSSN LSKKKKKMMD LKTNENVKKF RGVRQRPWGK WAAEIRDPVK 120 KTRIWLGTFE TAEEAAMVYD QAAIQIRGPD ALTNFMKPPV KKESVITSVS DYDSTGESEN 180 LCSPTSVLRH NDNNIGVTAT KIVTNEEMKD DRKRMEFVMQ NDQNGILLDD NLPLMDQCFL 240 KDFFDFRSPS PLMDDVLPVF CDDIDFPEME ILDGNGFLDE DLESCTWDVN DFLEDHCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 98 | 155 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-23 | 98 | 155 | 4 | 62 | ATERF1 |
3gcc_A | 1e-23 | 98 | 155 | 4 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631670.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6 | ||||
Refseq | XP_016442410.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A1S3XRA7 | 0.0 | A0A1S3XRA7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_009631670.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 7e-40 | cytokinin response factor 4 |