PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631347.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 336aa    MW: 37294.9 Da    PI: 9.6569
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32204260158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  XP_009631347.1 204 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKARKPYLHESRHLHAVKRVRGSGGRF 260
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-36202263IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.507203263IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.9E-24206228IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-27206260IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860208228IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.9E-24237260IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAIRAQALPN RSLEQTPTCF VPHFAVNNST WWSSNEVQSS QSLSKNLTSE VVFLPPPCQQ  60
MKFLGLELQG DDSHSTQSNS NPPLEVTAWG KTGSQDQCTS SGSDSLFAIS TGVRLRLVLL  120
FSVHDENYKR HKQAQIKPIS FIRNPEYTTD CSQSEMAHSI SHAPFGYSDP YLSGLYAAYG  180
PHVFPQMMGI APARLPLPLD LAEDGPIYVN AKQYHGILRR RQIRAKLEAQ NKLVKARKPY  240
LHESRHLHAV KRVRGSGGRF LSTKKVQESI PNDHINSSSS LDLVTREAHT SAFLSVRQDA  300
AHNGVIFQQQ QHDHRASSLS SHLAVSMQSS RSTGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19206265463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631340.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1
RefseqXP_009631347.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1
RefseqXP_018621987.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1
TrEMBLA0A1S3XZN80.0A0A1S3XZN8_TOBAC; nuclear transcription factor Y subunit A-5-like isoform X1
STRINGXP_009631340.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-36nuclear factor Y, subunit A5