PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 336aa MW: 37294.9 Da PI: 9.6569 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.7e-32 | 204 | 260 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF XP_009631340.1 204 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKARKPYLHESRHLHAVKRVRGSGGRF 260 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.2E-36 | 202 | 263 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.507 | 203 | 263 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.9E-24 | 206 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.4E-27 | 206 | 260 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 208 | 228 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.9E-24 | 237 | 260 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAIRAQALPN RSLEQTPTCF VPHFAVNNST WWSSNEVQSS QSLSKNLTSE VVFLPPPCQQ 60 MKFLGLELQG DDSHSTQSNS NPPLEVTAWG KTGSQDQCTS SGSDSLFAIS TGVRLRLVLL 120 FSVHDENYKR HKQAQIKPIS FIRNPEYTTD CSQSEMAHSI SHAPFGYSDP YLSGLYAAYG 180 PHVFPQMMGI APARLPLPLD LAEDGPIYVN AKQYHGILRR RQIRAKLEAQ NKLVKARKPY 240 LHESRHLHAV KRVRGSGGRF LSTKKVQESI PNDHINSSSS LDLVTREAHT SAFLSVRQDA 300 AHNGVIFQQQ QHDHRASSLS SHLAVSMQSS RSTGIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-19 | 206 | 265 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631340.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
Refseq | XP_009631347.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
Refseq | XP_018621987.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
TrEMBL | A0A1S3XZN8 | 0.0 | A0A1S3XZN8_TOBAC; nuclear transcription factor Y subunit A-5-like isoform X1 | ||||
STRING | XP_009631340.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-36 | nuclear factor Y, subunit A5 |