PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631194.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 422aa    MW: 46999.4 Da    PI: 9.0931
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1771130155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_009631194.1  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 130
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1771139IPR016177DNA-binding domain
PfamPF008471.5E-1371130IPR001471AP2/ERF domain
SMARTSM003806.5E-2672144IPR001471AP2/ERF domain
PROSITE profilePS5103220.07372138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1572139IPR001471AP2/ERF domain
PRINTSPR003674.2E-57384IPR001471AP2/ERF domain
PRINTSPR003674.2E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASPSSEPTA KPEGSSGNDV GGGETSEAMG SIGTDQLLLY RGPKKAKKER GCTAKERISK  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDEEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSGGFSR GISKYRPLSS  180
RWDLQFGRVP GADYFNSLQY GDDATVNNEY IGGFCMDRKI DLSSYIKWWG GNKARQTDSH  240
LKTSEETKVG CPEDIDNELR ASELSIQQTE PYEMPRFGVC QERKNHKSSA LSAMSILSQS  300
AAYKSLQEKV AKKKEKVENE NKSTINRVDR GKTIEKSSPD SGSKRLGAAF LNPGGSSISK  360
NLHPLTPLLS APLLTNYNNV DPLTDPVLWT SLVPIFHTGS SRTAEVHKSE ATSDYTLFQQ  420
ED
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631194.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_016440480.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-154AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1S3XKH40.0A0A1S3XKH4_TOBAC; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009631194.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-135AP2 family protein