PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631088.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 526aa    MW: 57337.9 Da    PI: 5.9612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09342390355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009631088.1 342 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 390
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.98E-10337394No hitNo description
SuperFamilySSF474593.53E-17337408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17340406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6342390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDMVSKDDAE SEKRCEDALN FQSPNMSSDW QLSGTNLTNA SIGMVSNSNP TVDSFCASVW  60
DHPTSLSNLG LSDTNIQMNH GTTNALDPLR TNVNRMLGMS RAQPNAISLK GGTFVPPTPG  120
MLPQSLSQFP ADSGFIERAA RFSCFSGGKV GDMMNPFTVP NSPNMYPNGL ALHRPQEVFA  180
SKGLQSPSAA ISEKQHTGNV VESSEDVCLP LENGAIDRSR LKNEKNESFA RSRDEAKECV  240
GIPGNESDEA ECSSHQEEVE GKDSSARSLG SKKRKRSGQD TEFDQTKGAQ QPPAEPTKDQ  300
TEIQKGEQNR LGGKNSKQGS QSADPPKEEY IHIRARRGQA TNSHSLAERL RREKISERMK  360
YLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATINPRLDFN IDGLLAKDIF  420
HSRTVPSSSL AFAPDMTMPY HSSQQLQPGL LQSGLPGLGN STNALLRSIY PHLSATSGGY  480
KESSSQLPNI WDDELHNVVE MGLSTSPPLH SQDLSGSLPS GQMKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631088.10.0PREDICTED: transcription factor bHLH49-like isoform X3
RefseqXP_016504736.10.0PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBLA0A1S4CUD90.0A0A1S4CUD9_TOBAC; transcription factor bHLH49-like isoform X2
STRINGXP_009631087.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-106bHLH family protein