PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631087.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 528aa    MW: 57625.3 Da    PI: 6.1105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09344392355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009631087.1 344 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 392
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.95E-10339396No hitNo description
SuperFamilySSF474593.53E-17339410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17342408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6344392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MRMDMVSKDD AESEKRCEDA LNFQSPNMSS DWQLSGTNLT NASIGMVSNS NPTVDSFCAS  60
VWDHPTSLSN LGLSDTNIQM NHGTTNALDP LRTNVNRMLG MSRAQPNAIS LKGGTFVPPT  120
PGMLPQSLSQ FPADSGFIER AARFSCFSGG KVGDMMNPFT VPNSPNMYPN GLALHRPQEV  180
FASKGLQSPS AAISEKQHTG NVVESSEDVC LPLENGAIDR SRLKNEKNES FARSRDEAKE  240
CVGIPGNESD EAECSSHQEE VEGKDSSARS LGSKKRKRSG QDTEFDQTKG AQQPPAEPTK  300
DQTEIQKGEQ NRLGGKNSKQ GSQSADPPKE EYIHIRARRG QATNSHSLAE RLRREKISER  360
MKYLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATINPRLD FNIDGLLAKD  420
IFHSRTVPSS SLAFAPDMTM PYHSSQQLQP GLLQSGLPGL GNSTNALLRS IYPHLSATSG  480
GYKESSSQLP NIWDDELHNV VEMGLSTSPP LHSQDLSGSL PSGQMKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631087.10.0PREDICTED: transcription factor bHLH49-like isoform X2
RefseqXP_016504735.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLA0A1S4CUD70.0A0A1S4CUD7_TOBAC; transcription factor bHLH49-like isoform X1
STRINGXP_009631087.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-106bHLH family protein