PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630988.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 734aa    MW: 81539 Da    PI: 9.739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-111770248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      rW t+E++ll++av+++G+++W+++a +++         +++ +c++++++++
   XP_009630988.1 17 SRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstataRLLSPHNCRLKYLDLK 70
                     69**********************************99889********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-51572IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-51673IPR009057Homeodomain-like
PfamPF002496.9E-111770IPR001005SANT/Myb domain
CDDcd001671.76E-51870No hitNo description
SuperFamilySSF473701.57E-16334445IPR001487Bromodomain
SMARTSM002972.8E-15339448IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-14348448IPR001487Bromodomain
CDDcd043694.95E-14353443No hitNo description
PfamPF004393.5E-11354433IPR001487Bromodomain
PROSITE profilePS5001412.209358429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAKPDGTVEK SSEEEESRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TATARLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKRR LEEERERSLQ QTENGESKSD LVKNEWRGAN NEKFEETEIG IKPEDKSSPE  180
LVAADEASEE ASDKDQQSVN ESSSTDPKHS CSLKNSAENE DKAEPVRTGT VKTEPLQTGS  240
IKEEPDKCGE ERPVREDSCN GSSDSVEKPP VGVTMKVEPV SESPELVESM AESKGGEEGT  300
KENSDVQSSV SKSRKKLDDI VVGGCSSGDE REKENRSPAV KEIPVESQPL IVFLEKIRSH  360
KLGSMFERRL ESQEAENYSN LIRQHVDLEM VQTWLENGRY ISCKSKFFRD LLLLVSNAIV  420
FFKKNSSEFV AATELRQLIL KEISRTKTKS YSLSDKQTSL KSASLSQKEI TKPSDSLLLK  480
TNISGSMIVC RKRSSITAKA SASSSGGDKK REQTITRPAE KLVVDTLQQP SQLATNAGEN  540
RITKKRTRDR FASGSASLNK NDKSRPNTTS IKNLAAVVDK NQGERESSSQ HPQSKSESRN  600
DQSNTDVKKR GVANFLNRMK QSSSSNSGLL LDALKSRPLS SGSKGGSEQK KNESGTDGGR  660
KEPASSKTHQ KKEPAPSKNP EAKQAKEKGS PMKKNVGRPP KRGADPSPPS RKRSREGAES  720
AAIPPKQPRK RSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630988.10.0PREDICTED: uncharacterized protein LOC104120840
TrEMBLA0A1S4A8D60.0A0A1S4A8D6_TOBAC; uncharacterized protein LOC107794870
STRINGXP_009630988.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-42DNA-binding bromodomain-containing protein