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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 431aa MW: 47558.8 Da PI: 8.9424 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 223 | 269 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ +L++l+P+a K +Ka++L ++++Y+k+Lq XP_009630767.1 223 VHNQSERRRRDRINQKMKTLQRLVPNA-----SKTDKASMLDEVINYLKQLQ 269 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.12E-16 | 213 | 273 | No hit | No description |
PROSITE profile | PS50888 | 17.752 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-19 | 222 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-14 | 223 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-18 | 224 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-17 | 225 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MWSLPGSHVN ARYFVHRIML PFILFLIYMS KCEKVAELTW ENPQIGMQGV GGILSMSQTK 60 PTILGRAGDT LESIVHQATY HGQNQTSIQN YGQNQNLKFG MCVGKWGESS QHQMAPPPST 120 RTGGATVLAK KRMRSESYGG NLVGEDEYEE RSACASASAT FCRENDTTMV TWPSFDESSR 180 SIKSKTTCDE DSACHDGGSQ ENKEEEHETK GSNSSRRSRA AVVHNQSERR RRDRINQKMK 240 TLQRLVPNAS KTDKASMLDE VINYLKQLQA QVQLMSSARN MAPQMMMPLG MHQHIQMSLL 300 ARMGMGVGLG MGMGMFDMTA LARAAAPHQS LTTHYPIHTN PIANPTNPFI PPAFAMPTAP 360 AIPSAAQANT VGRATTAVTP APYSAFLTQS MDTEYFNNMA ALYRQQANNH STQTTDSKLN 420 QGNLNIQGQR E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 232 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238568 | 2e-69 | AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence. | |||
GenBank | HG975515 | 2e-69 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630767.1 | 0.0 | PREDICTED: transcription factor UNE10-like isoform X3 | ||||
TrEMBL | A0A1S3ZK78 | 0.0 | A0A1S3ZK78_TOBAC; transcription factor UNE10-like isoform X3 | ||||
STRING | XP_009630765.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-36 | bHLH family protein |