PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630767.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 431aa    MW: 47558.8 Da    PI: 8.9424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16223269455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_009630767.1 223 VHNQSERRRRDRINQKMKTLQRLVPNA-----SKTDKASMLDEVINYLKQLQ 269
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-16213273No hitNo description
PROSITE profilePS5088817.752219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-19222292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-14223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18224285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-17225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MWSLPGSHVN ARYFVHRIML PFILFLIYMS KCEKVAELTW ENPQIGMQGV GGILSMSQTK  60
PTILGRAGDT LESIVHQATY HGQNQTSIQN YGQNQNLKFG MCVGKWGESS QHQMAPPPST  120
RTGGATVLAK KRMRSESYGG NLVGEDEYEE RSACASASAT FCRENDTTMV TWPSFDESSR  180
SIKSKTTCDE DSACHDGGSQ ENKEEEHETK GSNSSRRSRA AVVHNQSERR RRDRINQKMK  240
TLQRLVPNAS KTDKASMLDE VINYLKQLQA QVQLMSSARN MAPQMMMPLG MHQHIQMSLL  300
ARMGMGVGLG MGMGMFDMTA LARAAAPHQS LTTHYPIHTN PIANPTNPFI PPAFAMPTAP  360
AIPSAAQANT VGRATTAVTP APYSAFLTQS MDTEYFNNMA ALYRQQANNH STQTTDSKLN  420
QGNLNIQGQR E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385682e-69AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBankHG9755152e-69HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630767.10.0PREDICTED: transcription factor UNE10-like isoform X3
TrEMBLA0A1S3ZK780.0A0A1S3ZK78_TOBAC; transcription factor UNE10-like isoform X3
STRINGXP_009630765.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-36bHLH family protein