PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009630679.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28379.6 Da PI: 9.8279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.1e-18	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k XP_009630679.1 90 RKKLRLTKEQSTLLEESFKRHITLAMGKKQELAAKLKLKPRQVEVWFQNRRARTK 144 678899***********************************************98 PP
2	HD-ZIP_I/II	113.1	1.8e-36	90	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++ +L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+ XP_009630679.1 90 RKKLRLTKEQSTLLEESFKRHITLAMGKKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENSRLKKELQELRS 178 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-17	73	147	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-17	77	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	86	146	IPR001356	Homeobox domain
SMART	SM00389	3.0E-14	88	150	IPR001356	Homeobox domain
CDD	cd00086	1.11E-11	90	147	No hit	No description
Pfam	PF00046	3.6E-15	90	144	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
SMART	SM00340	3.3E-17	146	189	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.1E-9	146	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGNDNEICDT RLTLGLATSD LLPKQNQLEE HKKIICLDLS IPLHSSDMEE KKTEGSTSKI 60 CKNGQRQAPK SISPRNYNNF NSESNKNGMR KKLRLTKEQS TLLEESFKRH ITLAMGKKQE 120 LAAKLKLKPR QVEVWFQNRR ARTKLKQTEV DCEFLKKWCQ SLNDENSRLK KELQELRSIK 180 IDQWASPFHL QLPKIRTIAL CPSCQKTENI KSEQKHCDLD CGNRKVANDA MSKEANSETI 240 LVNEKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	146	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	2e-40	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630679.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT9-like
TrEMBL	A0A1U7VN60	1e-161	A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like
STRING	XP_009630679.1	1e-180	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-43	HD-ZIP family protein