PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 260aa MW: 31351.5 Da PI: 5.4557 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.8 | 4e-25 | 35 | 116 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W qe+++ + +r em++++ ++k++k lWe ++ km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l XP_009630607.1 35 QWNIQETKDFLMIRGEMDQNFMETKRNKLLWEVIATKMKEKGYNRSAEQCKCKWKNLVTRYKGCETTEAEA--L-RQQFPFYNEL 116 7********************************************************************95..3.4589***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.78E-23 | 34 | 99 | No hit | No description |
Pfam | PF13837 | 8.3E-21 | 35 | 117 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 36 | 92 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEGQPNLYNQ YQFISQQNLL NIDTSGVGVG DRFPQWNIQE TKDFLMIRGE MDQNFMETKR 60 NKLLWEVIAT KMKEKGYNRS AEQCKCKWKN LVTRYKGCET TEAEALRQQF PFYNELLAIF 120 MERMLRMEAE EEENDEDSEE EKGSNKKKRK LKGNTSSSRS SNVASGNLKE ILDEFMKKQM 180 ELEMQWQKEY ERREEERKIK EMEWRQTMEA LQNERLMMEK RWREREEQWK MREEARAEKR 240 NALITALLNK LRSEDTSAIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 150 | KKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630607.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Refseq | XP_016473633.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 4e-61 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1S4AAG4 | 0.0 | A0A1S4AAG4_TOBAC; trihelix transcription factor GT-3b-like | ||||
STRING | XP_009630607.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 4e-49 | Trihelix family protein |
Publications ? help Back to Top | |||
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