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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009630583.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
CO-like |
Protein Properties |
Length: 403aa MW: 44727.7 Da PI: 5.6172 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009630583.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.5 | 2e-06 | 13 | 54 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
++C+++ + + +C+ ++ +lC+ C +H H++
XP_009630583.1 13 KVCDTCRSTACTVYCRADSAYLCAGCDARIHAAnlvasrHER 54
68******99*********************65677777765 PP
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2 | zf-B_box | 28.9 | 2.4e-09 | 55 | 100 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ ++ + C+ + lC++C +H+ H +vp+
XP_009630583.1 55 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 100
689*****************************66899999877775 PP
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3 | CCT | 69.8 | 7.2e-24 | 334 | 377 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
XP_009630583.1 334 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 377
9*****************************************87 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009658 | Biological Process | chloroplast organization |
GO:0009909 | Biological Process | regulation of flower development |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
GO:0005622 | Cellular Component | intracellular |
GO:0005515 | Molecular Function | protein binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MLKKENSSNN WAKVCDTCRS TACTVYCRAD SAYLCAGCDA RIHAANLVAS RHERVWVCEA 60 CERAPAAFLC KADAASLCAS CDADIHSANP LARRHHRVPI MPIPGTLYGP PAVDTLSGGT 120 LMIGGPEGDA TEDDGFLSLT QDADDTTIDE EDKDEAASWL LLNLPVKNNN KNINNNNNNQ 180 NNYGMLFGGE VVDEYLDLAE YGGDSQFNDQ YSVNQQQQNY SVPQKNYGGD SVVPVQDRQG 240 KSMILYQQQQ QQQQQHNHHL SFQLGMEYDN SNTGYGYPAS MSHSVSISSI DVSVVPESAL 300 SETSNSHPRL PKGTIDLFSG PPIQMPTQLT PMDREARVLR YREKKKNRKF EKTIRYASRK 360 AYAETRPRIK GRFAKRTDVE AEVDQMFSTQ LIADSSYGIV PSF
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ686941 | 0.0 | JQ686941.1 Nicotiana tabacum cultivar SR1 constans (CO) mRNA, complete cds. |