PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009630231.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 228aa MW: 26116.4 Da PI: 9.1507

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.4e-32	151	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ XP_009630231.1 151 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 209 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-33	136	209	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	144	209	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	146	211	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	151	210	IPR003657	WRKY domain
Pfam	PF03106	3.4E-25	152	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MFSQSLFEDQ ADMSSQLGFF TFPPNYNNNM GSAITTTTLP FGICNHKTLT IIPPSFAADN 60 NSLIESTALR QKEDLTTSIF GGPHLLSLQK STANTWAWGE VNESNNIKRS RDNIDDHLGV 120 SAIKMKKMKS SRRKVREPRF CFKTLSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD 180 NCRVKKRVER LAEDPRMVIT TYEGRHVHSP SLDEEDSQAS SQLNNLLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-27	142	208	8	74	Probable WRKY transcription factor 4
2lex_A	5e-27	142	208	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	7e-68	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630231.1	1e-173	PREDICTED: probable WRKY transcription factor 13 isoform X2
Refseq	XP_016480880.1	1e-173	PREDICTED: probable WRKY transcription factor 13
Refseq	XP_018634566.1	1e-173	PREDICTED: probable WRKY transcription factor 13 isoform X3
TrEMBL	A0A1S4AW95	1e-172	A0A1S4AW95_TOBAC; probable WRKY transcription factor 13
STRING	XP_009630231.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10376	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	7e-53	WRKY DNA-binding protein 13