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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25550.4 Da PI: 6.3686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.5e-05 | 76 | 116 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+++ + ++ L++l+P+ + + K + i+ + ++YIk L+ XP_009630063.1 76 RRKMAEMYSVLQSLVPTlS---HVHKETRENIVAESTDYIKRLE 116 89***************44...9999***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.937 | 63 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-8 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.59E-5 | 76 | 119 | No hit | No description |
PROSITE profile | PS51671 | 11.228 | 160 | 225 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MWQEMMREET EEEEIERLFM GVMEGYKDTC IPPLTDVSTT NAMVGCSSLN YGKRQRKEGP 60 INENESINIQ KGREGRRKMA EMYSVLQSLV PTLSHVHKET RENIVAESTD YIKRLEQEIV 120 RLENLKKSFL GELVVDKPAL SQCRNRVSSV NVTVSKGLAF FGIQFQLSQG LLTKIFGVLD 180 KHQAEVLAAN ISVSDHRIAI LTITVMIGHN KSDIVENIQR ELLLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630063.1 | 1e-166 | PREDICTED: uncharacterized protein LOC104120081 | ||||
Refseq | XP_016496901.1 | 1e-166 | PREDICTED: uncharacterized protein LOC107815786 | ||||
TrEMBL | A0A1S4C726 | 1e-165 | A0A1S4C726_TOBAC; uncharacterized protein LOC107815786 | ||||
STRING | XP_009630063.1 | 1e-165 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-06 | bHLH family protein |