PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630019.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 581aa MW: 61553.3 Da PI: 9.2723

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.9e-08	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_009630019.1 205 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.723	200	257	IPR017930	Myb domain
SuperFamily	SSF46689	2.94E-12	201	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-13	201	254	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-8	204	255	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-6	205	249	IPR001005	SANT/Myb domain
CDD	cd11660	3.13E-14	206	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN 60 AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL 120 IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL 180 TSVMAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRHGNMV GNGSQLSEAQ LAARHAMSLA LGDNLRAACP ISTNVGPNSG 300 SAPSNSLHFA AANNASGGPK SEHQQDLVPS KPRVIPKNPL PKPAINPDSM VKTAAMAAGS 360 RIATPSGAAA SLQKAAESKK VVQIMPGGTP AVKSSVPGST NGLPSNVHFI RTGLVSRPPG 420 CGPSNASQSA VRPNPMAVPS RTNVSSGVPA GPTSSSARVL EAKTKAVATQ EIPAAILSNA 480 RREKVEIDQA ASMENAQQQV RKGQTFGSGN LLTEKVEGQT SILGHTVKEQ GGESKASRVL 540 VQEKLIPSVE TVSNNSIRNQ GENSNKNENT KIVLALESSG V

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN  60
AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL  120
IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL  180
TSVMAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRHGNMV GNGSQLSEAQ LAARHAMSLA LGDNLRAACP ISTNVGPNSG  300
SAPSNSLHFA AANNASGGPK SEHQQDLVPS KPRVIPKNPL PKPAINPDSM VKTAAMAAGS  360
RIATPSGAAA SLQKAAESKK VVQIMPGGTP AVKSSVPGST NGLPSNVHFI RTGLVSRPPG  420
CGPSNASQSA VRPNPMAVPS RTNVSSGVPA GPTSSSARVL EAKTKAVATQ EIPAAILSNA  480
RREKVEIDQA ASMENAQQQV RKGQTFGSGN LLTEKVEGQT SILGHTVKEQ GGESKASRVL  540
VQEKLIPSVE TVSNNSIRNQ GENSNKNENT KIVLALESSG V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	PRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630019.1	0.0	PREDICTED: uncharacterized protein LOC104120050 isoform X2
TrEMBL	A0A1S3YKW5	0.0	A0A1S3YKW5_TOBAC; uncharacterized protein LOC107777378
STRING	XP_009630017.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-76	MYB_related family protein