PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 596aa MW: 63036.8 Da PI: 9.2978 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.8e-07 | 205 | 233 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r++W++ Ed l+ av++ G g+W+ I + XP_009630018.1 205 RKPWSAAEDMELIAAVQKCGEGNWANILK 233 789***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 200 | 244 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-10 | 201 | 246 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.81E-9 | 201 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-4 | 204 | 270 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-5 | 205 | 233 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.63E-9 | 206 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN 60 AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL 120 IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL 180 TSVMAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQGCS SSSSTSSSRL QQRWAIIRKR HGNMVGNGSQ LSEAQLAARH AMSLALGDNL 300 RAACPISTNV GPNSGSAPSN SLHFAAANNA SGGPKSEHQQ DLVPSKPRVI PKNPLPKPAI 360 NPDSMVKTAA MAAGSRIATP SGAAASLQKA AESKKVVQIM PGGTPAVKSS VPGSTNGLPS 420 NVHFIRTGLV SRPPGCGPSN ASQSAVRPNP MAVPSRTNVS SGVPAGPTSS SARVLEAKTK 480 AVATQEIPAA ILSNARREKV EIDQAASMEN AQQQVRKGQT FGSGNLLTEK VEGQTSILGH 540 TVKEQGGESK ASRVLVQEKL IPSVETVSNN SIRNQGENSN KNENTKIVLA LESSGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 206 | PRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630017.1 | 0.0 | PREDICTED: uncharacterized protein LOC104120050 isoform X1 | ||||
TrEMBL | A0A1S3YKW5 | 0.0 | A0A1S3YKW5_TOBAC; uncharacterized protein LOC107777378 | ||||
STRING | XP_009630017.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-68 | MYB_related family protein |