PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009629872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 247aa MW: 28144.9 Da PI: 9.4832 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 95.2 | 6.6e-30 | 50 | 139 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwseeDe+v+L +i++++k+++sp ++ d fy f+k++++++v+ +ql eKirr+K+K+ ++ k s++k+h++k fels+ iW XP_009629872.1 50 SFQRLWSEEDELVILERMIEYESKKNASPAANYDVFYTFIKDKLQAEVNITQLKEKIRRIKRKYMNNIGK------RSVAKPHEEKLFELSQTIW 138 79********************************************************************......89***************** PP DUF573 97 g 97 g XP_009629872.1 139 G 139 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.1E-27 | 51 | 139 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MASLNLTKNH RDDTLEESDK DWTLPSHSNN RKKRTTEKSA KKGANVDAKS FQRLWSEEDE 60 LVILERMIEY ESKKNASPAA NYDVFYTFIK DKLQAEVNIT QLKEKIRRIK RKYMNNIGKR 120 SVAKPHEEKL FELSQTIWGD NIVDKEKRAA KVDDDLPKAG KLIVAKEKNS LCGGSSGSSL 180 VLHGGSAADL EDWFRRNPGL ISKEQRHEVL NKSHAVKIAK AEHQLNEITL MEEQVNLMTD 240 AVKASQE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629872.1 | 0.0 | PREDICTED: probable transcription factor At1g61730 | ||||
TrEMBL | A0A1S4A186 | 1e-180 | A0A1S4A186_TOBAC; uncharacterized protein LOC107792722 | ||||
STRING | XP_009629872.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-21 | DNA-binding storekeeper protein-related transcriptional regulator |