PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009629760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 743aa MW: 81855.6 Da PI: 5.0706 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 82 | 138 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ XP_009629760.1 82 RKRYHRHTQHQIQEMENFFKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 138 789999************************************************995 PP | |||||||
2 | START | 187.5 | 6.9e-59 | 267 | 487 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++e++++a+ +ep+W s +n++e+++ f+ + + +++ea+++++vv+m++ +lve+l+d + +W+ ++ a t+ XP_009629760.1 267 ELAVAAMEEFIQMAQMGEPLWLPSIdrrtNFLNEEEYVRLFPLGIGpklegFKTEASKDTAVVFMNHIKLVEILMDAN-KWSSMFSsivsTAVTV 360 57899********************999999**********99999********************************.*******999999*** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +v+s+g galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d + p+ +R++++pSg+li++++ng+skvtw+ehv XP_009629760.1 361 DVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRATPT----ARCRRRPSGCLIQEMPNGYSKVTWIEHV 451 ************************************************************996....**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + ++ + +++++l++sgla+gak+w atl+rqce+ XP_009629760.1 452 EADDTAIYSIYKPLLNSGLAFGAKRWIATLDRQCER 487 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 61 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-19 | 71 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-19 | 80 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.13E-20 | 81 | 140 | No hit | No description |
Pfam | PF00046 | 5.9E-18 | 82 | 137 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 5.16E-35 | 258 | 489 | No hit | No description |
PROSITE profile | PS50848 | 42.466 | 258 | 490 | IPR002913 | START domain |
CDD | cd08875 | 1.42E-119 | 262 | 486 | No hit | No description |
SMART | SM00234 | 2.6E-53 | 267 | 487 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-47 | 268 | 487 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.8E-7 | 335 | 487 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.41E-23 | 518 | 734 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MIPANQFSSM IGNDENDVGF VSSSSGLPLG QQSGNIMDMA SNTSESELMP LLTEEEFDSK 60 SGSDNQEGKS SDEQDANQSE RRKRYHRHTQ HQIQEMENFF KNCPHPDDKQ RKELSRELGL 120 EPLQVKFWFQ NKRTQMKNQN ERSELSSLRD ENEKLRTEHV QIREALNNAT SCPSCPICGG 180 PQISLGEMSF EENQLRIENA RLKEEVDRIS AFAAKHLGKP VSSLNVYSSP VTPPSSLDLG 240 NAFGNNGEVL RSSFNGPTEA EKPFIIELAV AAMEEFIQMA QMGEPLWLPS IDRRTNFLNE 300 EEYVRLFPLG IGPKLEGFKT EASKDTAVVF MNHIKLVEIL MDANKWSSMF SSIVSTAVTV 360 DVLSTGVAGN FNGALQVIFA EFQVPFPQVP TRDCYFVRYC KRSVDGIWAV VDVSLDYLRA 420 TPTARCRRRP SGCLIQEMPN GYSKVTWIEH VEADDTAIYS IYKPLLNSGL AFGAKRWIAT 480 LDRQCERLAS AMATNLPDDN TTNMILGGPE GRRSVLKLAE RMVISYCSGV SATAAHQWTT 540 LSGSGSENDV RIMFRKSIND PGRPPGIVMC AATSFWLPIS PKTAFDFLRD ENTRSEWDIL 600 SNGGVIQRLV HIANGRETGN SVSILRVNSS ANLRQNNMLI LQESSTDPTG SFVVYAPVDV 660 PAMNTVINGG DPDYVALLPS GFAILPDGPP GRIAGGSLLT IAFQILVDSV PTAKLSLGSV 720 ATVNKLIACT VDKIRAALLS DTP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629760.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_009629761.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A1S3YD48 | 0.0 | A0A1S3YD48_TOBAC; homeobox-leucine zipper protein HDG2-like | ||||
STRING | XP_009629760.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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