PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009629680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 201aa MW: 23902.4 Da PI: 9.4113 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.9 | 1.8e-34 | 31 | 125 | 2 | 102 |
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+y+ile +e+++++isw+ +gn fvv+ ++ef++++Lp yFkh+nf+SF+RQLn+YgFkkv++++ weF+h++Fkkg ++l XP_009629680.1 31 FLLKTYDILEeqeEENINKVISWNGEGNGFVVWCPDEFSEHMLPIYFKHNNFSSFIRQLNTYGFKKVTSKR---------WEFQHDKFKKGCRQL 116 9********9555568999*************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i rkk XP_009629680.1 117 LKEITRKKC 125 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.3E-42 | 27 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.6E-34 | 28 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.81E-29 | 28 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-11 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.2E-30 | 31 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-11 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 73 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-11 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MATDAIPATA DDRNISRKIG RSLRTKCPAP FLLKTYDILE EQEEENINKV ISWNGEGNGF 60 VVWCPDEFSE HMLPIYFKHN NFSSFIRQLN TYGFKKVTSK RWEFQHDKFK KGCRQLLKEI 120 TRKKCEPSAF PTYLQPTERN TFAIKEENTT KQLLMEENKN LRKERLELQM QIAHFQKLEI 180 KLLECLSQYV ENSQNKTRRL F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 4e-17 | 27 | 123 | 2 | 105 | Heat shock factor protein 2 |
5d8l_B | 4e-17 | 27 | 123 | 2 | 105 | Heat shock factor protein 2 |
5d8l_D | 4e-17 | 27 | 123 | 2 | 105 | Heat shock factor protein 2 |
5d8l_F | 4e-17 | 27 | 123 | 2 | 105 | Heat shock factor protein 2 |
5d8l_H | 4e-17 | 27 | 123 | 2 | 105 | Heat shock factor protein 2 |
5hdk_A | 3e-17 | 27 | 123 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 3e-17 | 27 | 123 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 3e-17 | 27 | 123 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 3e-17 | 27 | 123 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629680.1 | 1e-149 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A1S4CPW6 | 1e-147 | A0A1S4CPW6_TOBAC; heat stress transcription factor B-2a-like | ||||
STRING | XP_009629680.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-39 | heat shock transcription factor B2A |