PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629412.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 383aa    MW: 42699.9 Da    PI: 5.2843
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-071659239
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    ++r C+ ++e+ + l+C+ ++  lC +C  e H+       Ht+
  XP_009629412.1 16 QKRLCDFCGENTALLYCRADSAKLCFSCDREVHSTnqlftkHTR 59
                    6899*****************************66778888875 PP
2zf-B_box20.41e-0662104542
        zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      C+ +++ ++++ C ++++ +C++C  e+H +      H+++pl
  XP_009629412.1  62 LCDSCDSSPASILCCTDSCVFCQNCDWESH-NlslspaHERRPL 104
                     6*****************************.6688999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0821562IPR000315B-box-type zinc finger
SMARTSM003361.2E-131562IPR000315B-box-type zinc finger
PfamPF006433.9E-61659IPR000315B-box-type zinc finger
CDDcd000211.76E-71859No hitNo description
PROSITE profilePS501199.65558104IPR000315B-box-type zinc finger
CDDcd000217.60E-562104No hitNo description
SMARTSM003360.4663104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTELKEDQED QNQQPQKRLC DFCGENTALL YCRADSAKLC FSCDREVHST NQLFTKHTRW  60
LLCDSCDSSP ASILCCTDSC VFCQNCDWES HNLSLSPAHE RRPLEGFTGC PSVSELLSIL  120
GFEDLGKKAL LYGDSVTSDG GGYGFSDWLV WDTPSVVSLD DLIAPNDSGH NFQAIGVPPL  180
PKNRNAACGK HKEEILCQLR ELSKLEPNSS DDQDDIVAFQ FMEPAQNRQL GFKGSGFMQN  240
SEHAVVPSSE GSAFNWCSDT GKITDQGFSS SLADCFIETK CLLPDRDSDV GDASGGANEE  300
RSHNPPIADT FQMVPKVAHR ELNSQERETA VSRYKEKKKT RRYRHLLFHS VFSPFKFQVC  360
GVSVYKPPVI FKSKFSKLLI AIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754489e-84HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791542.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A1U7XHL80.0A0A1U7XHL8_NICSY; zinc finger protein CONSTANS-LIKE 13 isoform X1
STRINGXP_009629412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.22e-70B-box type zinc finger protein with CCT domain