PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628969.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 320aa    MW: 35083 Da    PI: 5.9165
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.4e-18228261134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_009628969.1 228 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 261
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.6E-722318IPR016679Transcription factor, GATA, plant
SMARTSM004016.4E-18222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.517222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15226285No hitNo description
Gene3DG3DSA:3.30.50.107.5E-15226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-13227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003202.1E-15228261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGSNFVDEID CGSFFDQIDD LIEFPSENEC GGLSSTDCKE FPSIWDQPLP DSDPLFSGSY  60
NNSPSDLSAE LSVPYEDIVQ LEWLSTFVED SFSGRGLTLG KENAPINKET SHSKFQSSSP  120
VSVLESSSSS SSSSCSGGKT FPLSPCHRGP QRARSKRPRP PTFNPRPAIQ LISPTLVFIE  180
NPRPFAAPVT SSQSENLAES PMKKIKFTIP LAPIETIHNS TAHAVRRCMH CEITKTPQWR  240
AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSMHS NSHKKVLEMR TKDIPENNAT  300
XPATTIQQEF NPSSTSSVEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628969.20.0PREDICTED: GATA transcription factor 8
RefseqXP_016445002.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016445003.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016445004.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016445005.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_018634171.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A1S3XYN10.0A0A1S3XYN1_TOBAC; GATA transcription factor
STRINGXP_009628969.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein