PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628781.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 172aa MW: 19376.3 Da PI: 9.4739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H XP_009628781.1 47 FECNTCNKRFPSFQALGGHRASH 69 89**********99999998887 PP
2	zf-C2H2	14.5	0.0001	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H XP_009628781.1 89 HECSICGMEFSLGQALGGHMRRH 111 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.079	47	69	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.6E-9	47	111	No hit	No description
Pfam	PF13912	7.7E-13	47	71	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.097	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-4	86	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.067	89	111	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.2E-9	89	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.118	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTGIKRSREE DRQVEAEAMA NCALMLLSRL NNNNNTTSTD RDYHNDFECN TCNKRFPSFQ 60 ALGGHRASHK RPRLLAGEFL VQSKKNKMHE CSICGMEFSL GQALGGHMRR HRDEINNTSA 120 AAGKTMIPML KKSNSSKRIF CGLDLNLTPD VDVELKLWPT APVLSPVLRI FI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628781.1	1e-127	PREDICTED: zinc finger protein ZAT12-like
TrEMBL	A0A1S4CH56	1e-111	A0A1S4CH56_TOBAC; zinc finger protein ZAT12-like
STRING	XP_009628781.1	1e-127	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-33	C2H2 family protein