PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 347aa MW: 37193.9 Da PI: 6.6617 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.2 | 2.6e-69 | 119 | 280 | 3 | 155 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrelkskkqsa 85 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++ +++ +kr+re ++s+ XP_009628767.1 119 GGGISCQDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTTLQQQQEEQQqqqqqqqtlqlhRDNIPKRQRE--DPSASS 211 5789***************************************************99998887774445444444333333333333..355667 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 l +t++ + s++ le+ ++P++vss+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e++ XP_009628767.1 212 LVCTRILPS-STSGLEVGNFPAKVSSNAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 280 777777665.455899999************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.5E-67 | 121 | 278 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.8E-27 | 123 | 165 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.0E-27 | 230 | 277 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAGFFSLGGG AASSSQAQDQ QQHQQSTNNP PTEISPDSWF LYRNDQELPT YRGFELWQTS 60 NSQPQIRHPI NPLQDLYPTA AVGLGVGPTR SGFTVTATRP DHDPSSGGSG GLVMMRSGGG 120 GISCQDCGNQ AKKDCEHMRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLTTLQQQQE 180 EQQQQQQQQQ TLQLHRDNIP KRQREDPSAS SLVCTRILPS STSGLEVGNF PAKVSSNAVF 240 HCVRMSSVDD AEDQFAYQTA VNIGGHVFKG ILYDQGPENQ YMAAGESSSG GGSASHQHNL 300 IGAVGTATSA ATTSASGGGA AAAPEASPYL DPSLYPAPLN TFMADTP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC331912 | 0.0 | KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628767.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2 | ||||
Swissprot | K4B6C9 | 1e-120 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A1S4DGG6 | 0.0 | A0A1S4DGG6_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X2 | ||||
STRING | XP_009628752.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 9e-65 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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