PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009628581.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20063.1 Da PI: 10.6166

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.8	5.2e-17	58	102	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ie++ r+ tfskRr g+ KKA+EL LC+++v +++fs+tgk XP_009628581.1 58 KKIESEDDRYATFSKRRSGLYKKASELVKLCNIDVGIVLFSPTGK 102 68*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-20	50	109	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.124	50	110	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.93E-23	51	122	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-15	52	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-21	59	105	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-15	72	87	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-15	87	108	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MVAAVGFVLA EFWAQVRPRR SELGRAGGRS QMQTTFHTCA IAAMEGKKTR ERQKIPMKKI 60 ESEDDRYATF SKRRSGLYKK ASELVKLCNI DVGIVLFSPT GKPFSIFHPT SQAIIDRFLN 120 PNMQLSETSS LVAAHARNKV NQLNNRKEVF DNIKEVASAQ SLLLDNMKEN GQRYWLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469158.1	4e-96	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_018634029.1	4e-96	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S3ZXT3	1e-94	A0A1S3ZXT3_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009628581.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-26	AGAMOUS-like 61