PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 405aa MW: 44741.8 Da PI: 9.0725 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 162 | 184 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg+ F+ ++L++H+ + H XP_009628578.1 162 ACPQCGEIFPKIESLEHHQAVrH 184 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 161 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.621 | 161 | 189 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 3.5E-12 | 186 | 401 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 1.92E-24 | 186 | 401 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MALFTFLPEA SETQKQPSKR RKKQQKQKQP SSWDQFKNLL SCKQIENSTV DDPSKNAYYS 60 KLGSCSSICS FKDVVLHHGN NTRVVHRVDD NNNSLEDQSS SSLGQETRLL SKKTSHGSTS 120 SRSFGSSTSS KGMQFRKLSR CYECHMIVDP SRYPLPRSTI CACPQCGEIF PKIESLEHHQ 180 AVRHAVSELS PEDSSRNIVE IIFKSSWLKK DNPICKIERI LKVHNTKRII HKFEDYRDAV 240 KLRATVNGKK NPRCAADGNE LLRFYCTTLT CSLGAKGTSN LCSSVCTPGC GVCTIIRHGF 300 QGNNNKVCGV RTTASSGRAH DCLGSGADGR RAMLVCRVIA GRVKRVAEDT AATEESGGSG 360 LSAAANLYDS VVGYSDVYSN LEELYVFNPR AILPCFVVIY KALES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ809740 | 1e-33 | FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence. | |||
GenBank | HG975443 | 1e-33 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628578.1 | 0.0 | PREDICTED: uncharacterized protein LOC104118897 | ||||
TrEMBL | A0A1S3ZA61 | 0.0 | A0A1S3ZA61_TOBAC; uncharacterized protein LOC107784482 | ||||
STRING | XP_009628578.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-149 | C2H2-like zinc finger protein |